Re: [gmx-users] g_msd query

2011-05-19 Thread Erik Marklund
Anirban Ghosh skrev 2011-05-19 11.58: Hi ALL, I am trying to calculate the lateral diffusion coefficient of a protein in a bilayer (CG simulation using MARTINI FF). The simulation length is 5 micro-seconds. I wanted to know based on what should i set the values of -beginfit and -endfit and al

[gmx-users] g_msd query

2011-05-19 Thread Anirban Ghosh
Hi ALL, I am trying to calculate the lateral diffusion coefficient of a protein in a bilayer (CG simulation using MARTINI FF). The simulation length is 5 micro-seconds. I wanted to know based on what should i set the values of -beginfit and -endfit and also the value for -trestart. Is it necessary