Re: [gmx-users] g_hbond -ac -life

2010-11-24 Thread Erik Marklund
shahab shariati skrev 2010-11-24 16.45: Dear Erik thanks. thus -ac is only for determine the rate for hb breaking. is it true? or there is other usable case for -ac option? And formation. And equillibrium constant. -- --- Erik Marklund, PhD stude

[gmx-users] g_hbond -ac -life

2010-11-24 Thread shahab shariati
Dear Erik thanks. thus -ac is only for determine the rate for hb breaking. is it true? or there is other usable case for -ac option? -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support

Re: [gmx-users] g_hbond -ac -life

2010-11-24 Thread Erik Marklund
shahab shariati skrev 2010-11-24 16.24: Dear gromacs users I used g_hbond -f .trr -s .tpr -n .ndx -ac -life. Can anyone clarify last 2 columns in hblife.xvg and last 4 columns hbac.xvg files by details. Also, I want to know what is difference between p(t) in hblife.xvg and c(t) in hbac.xvg f

[gmx-users] g_hbond -ac -life

2010-11-24 Thread shahab shariati
Dear gromacs users I used g_hbond -f .trr -s .tpr -n .ndx -ac -life. Can anyone clarify last 2 columns in hblife.xvg and last 4 columns hbac.xvg files by details. Also, I want to know what is difference between p(t) in hblife.xvg and c(t) in hbac.xvg file? which of them is more suitable for HB li

[gmx-users] g_hbond -ac -life

2010-11-20 Thread shahab shariati
Dear gromacs users I used g_hbond -f .trr -s .tpr -n .ndx -ac -life. Can anyone clarify last 2 columns in hblife.xvg and last 4 columns hbac.xvg files by details. Also, I want to know what is difference between p(t) in hblife.xvg and c(t) in hbac.xvg file? which of them is more suitable for HB life