Re: [gmx-users] g_dist without output file

2012-03-14 Thread afsaneh maleki
On 3/10/12, lina wrote: > On Sat, Mar 10, 2012 at 10:23 PM, Atila Petrosian > wrote: >> Dear Lina >> >> There is not any things related to list of atoms on the terminal. > > Might your distance -dist so large. > > try a smaller one and see. >> >> >> Best regards >> -- >> gmx-users mailing list  

Re: [gmx-users] g_dist without output file

2012-03-10 Thread Mark Abraham
On 11/03/2012 6:38 PM, Atila Petrosian wrote: Dear Lina Very thanks for your time and attention. Initial command was : g_dist -f *.trr -s *.tpr -n *.ndx -o dist.xvg -dist 0.5 After running following command the problem was solved : g_dist -f *.trr -s *.tpr -n *.ndx -o dist.xvg -dist 5 t: 170

[gmx-users] g_dist without output file

2012-03-10 Thread Atila Petrosian
Dear Lina Very thanks for your time and attention. Initial command was : g_dist -f *.trr -s *.tpr -n *.ndx -o dist.xvg -dist 0.5 After running following command the problem was solved : g_dist -f *.trr -s *.tpr -n *.ndx -o dist.xvg -dist 5 t: 17008 6773 NA 21881 NA 3.05534 (nm) t: 17008 677

Re: [gmx-users] g_dist without output file

2012-03-10 Thread lina
On Sat, Mar 10, 2012 at 10:23 PM, Atila Petrosian wrote: > Dear Lina > > There is not any things related to list of atoms on the terminal. Might your distance -dist so large. try a smaller one and see. > > > Best regards > -- > gmx-users mailing list    gmx-users@gromacs.org > http://lists.groma

Re: [gmx-users] g_dist without output file

2012-03-10 Thread lina
On Sat, Mar 10, 2012 at 10:23 PM, Atila Petrosian wrote: > Dear Lina > > There is not any things related to list of atoms on the terminal. t: 100 83 ILE 845 CG1 1.60274 (nm) t: 100 83 ILE 846 CG2 1.63838 (nm) t: 100 83 ILE 847 CD 1.59769 (nm) t: 100 83 ILE 848 C 1.8202 (nm) t: 100 83 IL

[gmx-users] g_dist without output file

2012-03-10 Thread Atila Petrosian
Dear Lina There is not any things related to list of atoms on the terminal. Best regards -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Pleas

Re: [gmx-users] g_dist without output file

2012-03-10 Thread lina
On Sat, Mar 10, 2012 at 9:17 PM, Atila Petrosian wrote: > Dear Lina > > Thanks for your reply. > > Without the -dist 0.5, I get the -o dist.xvg output, but I need list > of the all atoms in group 2 closer than dist to the center of mass of > group 1. It print on the terminal, you may notice it.

[gmx-users] g_dist without output file

2012-03-10 Thread Atila Petrosian
Dear Lina Thanks for your reply. Without the -dist 0.5, I get the -o dist.xvg output, but I need list of the all atoms in group 2 closer than dist to the center of mass of group 1. -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please searc

Re: [gmx-users] g_dist without output file

2012-03-10 Thread lina
On Sat, Mar 10, 2012 at 7:14 PM, Atila Petrosian wrote: > Dear all > > When I use  g_dist -f *.trr -s *.tpr -n *.ndx -o dist.xvg -dist 0.5, > program was done without error, but it don't create output file > (dist.xvg) in the directory in which g_dist tool was run. > > What is reason of this case?

[gmx-users] g_dist without output file

2012-03-10 Thread Atila Petrosian
Dear all When I use g_dist -f *.trr -s *.tpr -n *.ndx -o dist.xvg -dist 0.5, program was done without error, but it don't create output file (dist.xvg) in the directory in which g_dist tool was run. What is reason of this case? Any help will highly appreciated. -- gmx-users mailing listgm