Re: [Bulk] Re: [gmx-users] force=nan in frame 0

2007-11-12 Thread Yang Ye
PROTECTED] <mailto:[EMAIL PROTECTED]> [mailto:[EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]>] > On Behalf Of Mark Abraham > Sent: Sunday, November 11, 2007 9:04 AM > To: Discussion list for GROMACS users > Subject: Re: [gmx-users] force=nan in frame 0 > > > dong

Re: [gmx-users] force=nan in frame 0

2007-11-12 Thread Dongsheng Zhang
TED]> To: Discussion list for GROMACS users Sent: Monday, November 12, 2007 2:33:38 PM Subject: Re: [gmx-users] force=nan in frame 0 how do you turn off the interactions? e.g. setting rvdw=0 doesn't mean turning of vdw interactions. Regards, Yang Ye On 11/13/2007 12:55 AM, dongsheng

Re: [gmx-users] force=nan in frame 0

2007-11-12 Thread Yang Ye
11, 2007 9:04 AM To: Discussion list for GROMACS users Subject: Re: [gmx-users] force=nan in frame 0 dongsheng zhang wrote: Dear Mark, Thank you for your reply. I have used gromacs before. In fact, I have built this FF before, and using it successfully. My old computer was crashed, so I nee

RE: [gmx-users] force=nan in frame 0

2007-11-12 Thread dongsheng zhang
sheng -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Mark Abraham Sent: Sunday, November 11, 2007 9:04 AM To: Discussion list for GROMACS users Subject: Re: [gmx-users] force=nan in frame 0 dongsheng zhang wrote: > Dear Mark, > > Thank you for your

Re: [gmx-users] force=nan in frame 0

2007-11-11 Thread Mark Abraham
dongsheng zhang wrote: Dear Mark, Thank you for your reply. I have used gromacs before. In fact, I have built this FF before, and using it successfully. My old computer was crashed, so I need to do it again. The potential energies looked fine in the md.log. Even I turn off all potentials. I stil

[gmx-users] force=nan in frame 0

2007-11-11 Thread dongsheng zhang
Dear Mark, Thank you for your reply. I have used gromacs before. In fact, I have built this FF before, and using it successfully. My old computer was crashed, so I need to do it again. The potential energies looked fine in the md.log. Even I turn off all potentials. I still get the initial foce =