Hey Sajad,
That sounds quite serious, having a fetal error
(http://www.thefreedictionary.com/fetal)!
But it seems you just have a missing atom, as is indicated in the
output. Check the structure before trying to convert it. In
particular, read the sections in the PDB file starting with 'REMARK
46
dear users
after running the command "pdb2gmx -f 1OL5.pdb -o 1OL5.gro -water spc" ,i was
faced with the erorr: "Fatal error: Atom CG not found in residue seq.nr. 251
while adding atom". i used Gromacs 4.5.3
with AMBER99SB force field. it seems that some atomes are missing.should i be
modeling th
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