Re: [gmx-users] fatal error occuring.

2011-11-18 Thread Justin A. Lemkul
swati patel wrote: Hello Justin, Somehow I obtained ligand and protein topology in charmm force fields. After command grompp,I am getting an error "No such moleculetype LIG" where lig is my ligand abbreviation. Any suggestions for my error?? Have you done the proper tutorial material? T

[gmx-users] fatal error occuring.

2011-11-18 Thread swati patel
Hello Justin, Somehow I obtained ligand and protein topology in charmm force fields. After command grompp,I am getting an error "No such moleculetype LIG" where lig is my ligand abbreviation. Any suggestions for my error?? Thanx. -- gmx-users mailing listgmx-users@gromacs.org http://lists.

Re: [gmx-users] fatal error occuring.

2011-11-18 Thread Justin A. Lemkul
ibi2010...@iiita.ac.in wrote: Hello Justin, After setting up grompp command,i am getting an error "Atoms in the .top are not numbered consecutively from 1 (rather, atomnr = 1, while at->nr = 1179)".I am heading up step by step taking your aid. What should i do?How to correct it?? Without s

[gmx-users] fatal error occuring.

2011-11-18 Thread ibi2010004
Hello Justin, After setting up grompp command,i am getting an error "Atoms in the .top are not numbered consecutively from 1 (rather, atomnr = 1, while at->nr = 1179)".I am heading up step by step taking your aid. What should i do?How to correct it?? Thanx. ---