Re: [gmx-users] dodssp segmentation fault SOLVED for DEBIAN

2012-06-14 Thread raf ponsaerts
Indeed, I am still using Gromacs-4.5.5, downloaded from gromacs.org on Debian GNU/Linux 6.0.5 (48-core AMD64) with kernel 3.1.1 and patched do_dssp manually as has been done for the newer releases. Works fine with the new dssp-2.0.4 release. raf On Thu, 2012-06-14 at 13:39 +0200, Erik Marklund

Re: [gmx-users] dodssp segmentation fault SOLVED for DEBIAN

2012-06-14 Thread Erik Marklund
This issue has been resolved so the next official release of gromacs will be capacle of using the newer versions of dssp. Erik 14 jun 2012 kl. 12.57 skrev Denis Kazakiewicz: > Wow, just did that. > In Debian have to use 4.5.5-2 version of Gromacs from sid repository. > Still have to use the old

Re: [gmx-users] dodssp segmentation fault SOLVED for DEBIAN

2012-06-14 Thread Denis Kazakiewicz
Wow, just did that. In Debian have to use 4.5.5-2 version of Gromacs from sid repository. Still have to use the oldest dssp http://swift.cmbi.ru.nl/gv/dssp/HTML/dsspcmbi It was simply Gromacs issue with no ways around. And it woks:) Just wondering, What are other efficient ways of analyzing se