Re: [gmx-users] cutting out a portion of a crystal using triclinic box

2007-05-03 Thread David van der Spoel
Mark Abraham wrote: Tsjerk Wassenaar wrote: Hi Andrea, On 5/3/07, Mark Abraham <[EMAIL PROTECTED]> wrote: Andrea Robben Browning wrote: > I am trying to cut out a portion of a large equilbrated crystal to make > a smaller crystal. I have been using the genbox command but since it > tries to

Re: [gmx-users] cutting out a portion of a crystal using triclinic box

2007-05-02 Thread Mark Abraham
Tsjerk Wassenaar wrote: Hi Andrea, On 5/3/07, Mark Abraham <[EMAIL PROTECTED]> wrote: Andrea Robben Browning wrote: > I am trying to cut out a portion of a large equilbrated crystal to make > a smaller crystal. I have been using the genbox command but since it > tries to fill up a brick of spa

Re: [gmx-users] cutting out a portion of a crystal using triclinic box

2007-05-02 Thread Tsjerk Wassenaar
Hi Andrea, On 5/3/07, Mark Abraham <[EMAIL PROTECTED]> wrote: Andrea Robben Browning wrote: > I am trying to cut out a portion of a large equilbrated crystal to make > a smaller crystal. I have been using the genbox command but since it > tries to fill up a brick of space and my crystal is tric

Re: [gmx-users] cutting out a portion of a crystal using triclinic box

2007-05-02 Thread Mark Abraham
Andrea Robben Browning wrote: I am trying to cut out a portion of a large equilbrated crystal to make a smaller crystal. I have been using the genbox command but since it tries to fill up a brick of space and my crystal is triclinic I end up will dangling molecules. Is there any command that

[gmx-users] cutting out a portion of a crystal using triclinic box

2007-05-02 Thread Andrea Robben Browning
I am trying to cut out a portion of a large equilbrated crystal to make a smaller crystal. I have been using the genbox command but since it tries to fill up a brick of space and my crystal is triclinic I end up will dangling molecules. Is there any command that can cut a larger configuration