Thank Justin so much ! Sorry about my stupid question. I have looked the
algorithm and i got it.
On Tue, Jan 22, 2013 at 8:05 PM, Justin Lemkul wrote:
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>
> On 1/22/13 12:00 AM, Kieu Thu Nguyen wrote:
>
>> Thank Justin ! And i used GridMAT-MD as you advised.
>>
>> I got result "The average bila
On 1/22/13 12:00 AM, Kieu Thu Nguyen wrote:
Thank Justin ! And i used GridMAT-MD as you advised.
I got result "The average bilayer "thickness" will be printed to
50x50_average_pbc.dat". But that result is only equal to a half of
experiment result. I think "bilayer thickness" is equal to the su
Thank Justin ! And i used GridMAT-MD as you advised.
I got result "The average bilayer "thickness" will be printed to
50x50_average_pbc.dat". But that result is only equal to a half of
experiment result. I think "bilayer thickness" is equal to the sum of "top
leaflet thickness" and "bottom leaflet
On 1/21/13 10:17 AM, Kieu Thu Nguyen wrote:
Thank Justin ! That is APL. How about bilayer thickness ? I made
density.xvg file of headgroup from using g_density.
g_dist with index groups specifying however you want to define the boundaries
for the membrane, or (shameless plug) a lateral proj
Thank Justin ! That is APL. How about bilayer thickness ? I made
density.xvg file of headgroup from using g_density.
On Mon, Jan 21, 2013 at 7:31 PM, Justin Lemkul wrote:
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>
> On 1/21/13 5:12 AM, Kieu Thu Nguyen wrote:
>
>> Dear All,
>>
>> I want to know that my lipid bilayer is equilibrated o
On 1/21/13 5:12 AM, Kieu Thu Nguyen wrote:
Dear All,
I want to know that my lipid bilayer is equilibrated or not yet. So i want
to calculate the change of area per lipid and the bilayer thickness versus
time.
Which tool or method should i use ?
Extract box vectors over time from the .edr f
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