I've used Macromolecular Builder for inserting loops in proteins. You'll need
further minimization and dynamics to get a relaxed structure though, but that's
where Gromacs comes in.
Erik
30 aug 2012 kl. 18.07 skrev shahid nayeem:
> Dear all
> I am repeating this mail as it could not get upload
Dear all
I am repeating this mail as it could not get uploaded on site. Please
suggest me that whether I can insert 15 residue sequence in an
existing pdb file and can I get the minimized altered coordinates from
here. If not then please suggest an external software or server where
I can model this
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