Re: [gmx-users] average trajectory

2011-05-19 Thread Tsjerk Wassenaar
Hey, If you can sum them, the only thing needed afterwards is updating the color labels. Like per awk (dividing by two): awk -F\" '/#/{$4=$4/2}1' file.xpm Cheers, Tsjerk On Thu, May 19, 2011 at 2:43 PM, Erik Marklund wrote: > Justin A. Lemkul skrev 2011-05-19 14.30: >> >> >> Yulian Gavrilov

Re: [gmx-users] average trajectory

2011-05-19 Thread Erik Marklund
Justin A. Lemkul skrev 2011-05-19 14.30: Yulian Gavrilov wrote: Dear gromacs users, 1. I have got 3 MD-outputs for the same protein (3 runnings for 100 ns). I want to make a distance matrix (*g_mdmat*) for the average trajectory of these 3 runnings. *g_mdmat* gives an average matrix for

Re: [gmx-users] average trajectory

2011-05-19 Thread Justin A. Lemkul
Yulian Gavrilov wrote: Dear gromacs users, 1. I have got 3 MD-outputs for the same protein (3 runnings for 100 ns). I want to make a distance matrix (*g_mdmat*) for the average trajectory of these 3 runnings. *g_mdmat* gives an average matrix for one trajectory, but I want to get it for

[gmx-users] average trajectory

2011-05-19 Thread Yulian Gavrilov
Dear gromacs users, 1. I have got 3 MD-outputs for the same protein (3 runnings for 100 ns). I want to make a distance matrix (*g_mdmat*) for the average trajectory of these 3 runnings. *g_mdmat* gives an average matrix for one trajectory, but I want to get it for the average trajectory. I tried t