Short answer is to inspect your complex with VMD or Pymol (or some
other viewer). Pymol takes pdb input, so unless your structure is
contained in a pdb file you must convert it with e.g. trjconv first.
If you want a single frame you need to extract one form your
trajectory, or, if the final
On 1/28/13 9:30 AM, Sainitin Donakonda wrote:
Hello,
Recently i started working on molecular dynamics on my protein ligand
complex using gromacs i successfully did simulation but i dont know how to
visualize this protein-ligand complex this after MD simulation
Can any body tell me how to do
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