Re: [gmx-users] Uniform Distribution of drug molecules inside water spc216

2011-10-12 Thread Mark Abraham
On 13/10/2011 2:13 AM, meisam valizadeh kiamahalleh wrote: Dear GMX users Good day to you I have some drug molecules (cisplatin) added manually and randomly inside a system which is going to be solvated in spc216 water. I used genbox command to add the correct number of water molecules needed

Re: [gmx-users] Uniform Distribution of drug molecules inside water spc216

2011-10-12 Thread Justin A. Lemkul
meisam valizadeh kiamahalleh wrote: Dear Justin Thank you very much for your always prompt reply. Actually, I added many of drug molecules by copying and pasting a single molecule in discovery studio software. I could even move the drug molecules to any desired locations by select and draggi

Re: [gmx-users] Uniform Distribution of drug molecules inside water spc216

2011-10-12 Thread Justin A. Lemkul
meisam valizadeh kiamahalleh wrote: Dear GMX users Good day to you I have some drug molecules (cisplatin) added manually and randomly inside a system which is going to be solvated in spc216 water. I used genbox command to add the correct number of water molecules needed to solvate the box.

[gmx-users] Uniform Distribution of drug molecules inside water spc216

2011-10-12 Thread meisam valizadeh kiamahalleh
Dear GMX users Good day to you I have some drug molecules (cisplatin) added manually and randomly inside a system which is going to be solvated in spc216 water. I used genbox command to add the correct number of water molecules needed to solvate the box. The drug molecules are located very closed