10, XAvier Periole wrote:
From: XAvier Periole
Subject: Re: [gmx-users] Time for equilibration
To: "Discussion list for GROMACS users"
Date: Thursday, 15 April, 2010, 1:46 PM
The distortion of a protein starting structure can result from
various reasons:
1- experimental determinat
10, XAvier Periole wrote:
From: XAvier Periole
Subject: Re: [gmx-users] Time for equilibration
To: "Discussion list for GROMACS users"
Date: Thursday, 15 April, 2010, 1:46 PM
The distortion of a protein starting structure can result from various
reasons:1- experimental determinat
The distortion of a protein starting structure can result from various
reasons:
1- experimental determination of the structure: this include the
experimental
conditions (T, pH) as well as the crystal contacts if X-ray were used,
dynamics
of some part of the molecule if NMR.
2- the manner y
Hello All,
I have a protein of 576 amino acid long, and has a barell shape topolgy.
I have done MD simulation on it for 1ns, and my protein has got distorted
shape, i.e, one of the strand became coil and other strands became small.
I wrote this query before also, can it be possible that this is du
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