Re: [gmx-users] Tabulated potentials for dihedrals - regd

2012-06-07 Thread ramesh cheerla
Dear Mark, I am very Thankful to you for your valuable suggestion. On Thu, Jun 7, 2012 at 12:04 PM, Mark Abraham wrote: > On 7/06/2012 4:33 AM, ramesh cheerla wrote: > > Dear Mark, > > Thank you for your reply, According to my > understanding functional form of di

Re: [gmx-users] Tabulated potentials for dihedrals - regd

2012-06-06 Thread Mark Abraham
On 7/06/2012 4:33 AM, ramesh cheerla wrote: Dear Mark, Thank you for your reply, According to my understanding functional form of dihedral function type 9 is same as dihedral function type 1 i.e k(1 + cos(n (phi)- phis)) except the difference that function type 9 i

Re: [gmx-users] Tabulated potentials for dihedrals - regd

2012-06-06 Thread ramesh cheerla
Dear Mark, Thank you for your reply, According to my understanding functional form of dihedral function type 9 is same as dihedral function type 1 i.e k(1 + cos(n (phi)- phis)) except the difference that function type 9 is used to handle the multiple potential functions

Re: [gmx-users] Tabulated potentials for dihedrals - regd

2012-06-04 Thread Mark Abraham
On 4/06/2012 3:46 AM, ramesh cheerla wrote: Dear Gromacs experts, I am planing to use tabulated potentials for dihedral functional form Summn over 'n' 0.5*K [ ( Cos n(phi-phi0)] , Here 1<= n <= 3 . I have three different K values (i.e K1,K2,K3 ) one for eac

[gmx-users] Tabulated potentials for dihedrals - regd

2012-06-03 Thread ramesh cheerla
Dear Gromacs experts, I am planing to use tabulated potentials for dihedral functional form Summn over 'n' 0.5*K [ ( Cos n(phi-phi0)] , Here 1<= n <= 3 . I have three different K values (i.e K1,K2,K3 ) one for each 'n' value ( Here 'n' is multiplicity). I have

[gmx-users] tabulated potentials for dihedrals - regd

2012-05-18 Thread ramesh cheerla
Dear Gromacs users, I am using tabulated potentials for the dihedrals of my system, the dihedral function I am using is Summn over 'n' 0.5*K [ ( Cos n(phi-phi0)] , Here 1<= n <= 3 . The C-O-C-C dihedral of my system has three folds those are n= 1 , 2, 3 and three diff