[gmx-users] Segmentation fault with gromacs 3.3.3

Dear gmx-users, In Red Hat Enterprise Linux ES release 4 (Nahant Update 4) Same problem as in debian. When I ryn simple test: *** glibc detected *** mdrun: realloc(): invalid next size: 0x082a20d0 *** And when I run double test, here is the result; Anyone could help? [EMAIL PROTECTED]:gmxte

Re: [gmx-users] Segmentation fault with gromacs 3.3.3

Once again, in reply to myself I could state that gromacs-3.3.3 won't build correctly on debian systems with gcc-4.3 neither. gmxtest simple dumps the following information. *** glibc detected *** mdrun: realloc(): invalid next size: 0x082a20d0 *** === Backtrace: = /lib/i686/cmov/libc.

Re: [gmx-users] Segmentation fault with gromacs 3.3.3

It seems to be a problem related to the debian package. I have compiled gromacs 3.3.3 from source with gcc-4.3 and apparently the problem has dissapeared. Perhaps, the binaries on the debian package were compiled with gcc-4.1. Cesar Avila escribió: > Dear all, > I am new to the gromacs simulation

[gmx-users] Segmentation fault with gromacs 3.3.3

Dear all, I am new to the gromacs simulation package. Thus far I have been using Charmm and NAMD, but now I am interested on testing Marrink's Coarse-Grained Martini FF. I managed to setup an initial configuration for a protein in a water box. After a few minimization steps, I ran the simulation fo