I connect the monomers by adding a bond in the rtp entry, in which the
first atom of the next residue is given with + (you can also connect
with the previous residue with - in front of the last atom). Sorry to
explain this in a very confuse way. Better look at the example bellow
(for polystyrene):
varsha gautham wrote:
Hello justin,
Am sorry to say that its not useful.But what i mean is that the rtp
constructed manually is building up the polymer and generating topology
files and gro files.
But when i look into the gro file with vmd the connectivity between each
of the monomer is not
Hello justin,
Am sorry to say that its not useful.But what i mean is that the rtp
constructed manually is building up the polymer and generating topology
files and gro files.
But when i look into the gro file with vmd the connectivity between each of
the monomer is not built.That is my polymer co
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