Re: [gmx-users] Removing water molecules from inside of the protein

2008-11-20 Thread Justin A. Lemkul
DimitryASuplatov wrote: Hello, recently after adding spc water to a structure I have notice that the molecules have been added to internal cavities. Even though this situation is possible, for example water could get inside during folding, this could cause artificial movement of aminoacids bein

[gmx-users] Removing water molecules from inside of the protein

2008-11-20 Thread DimitryASuplatov
Hello, recently after adding spc water to a structure I have notice that the molecules have been added to internal cavities. Even though this situation is possible, for example water could get inside during folding, this could cause artificial movement of aminoacids being pushed from inside by inte