Re: [gmx-users] Removing water from sides of bilayer

2009-01-06 Thread Mark Abraham
krithika krishnaswamy wrote: hello, Am a new user to gromacs.how to add water to a bilayer.i tried adding water to entire system and then removed water from sides using tcl script.But its not working. Is there anyway to build lipid layer by layer and add water or something can be done with

Re: [gmx-users] Removing water from sides of bilayer

2009-01-06 Thread Justin A. Lemkul
krithika krishnaswamy wrote: hello, Am a new user to gromacs.how to add water to a bilayer.i tried adding water to entire system and then removed water from sides using tcl script.But its not working. Is there anyway to build lipid layer by layer and add water or something can be done wit

[gmx-users] Removing water from sides of bilayer

2009-01-06 Thread krithika krishnaswamy
hello, Am a new user to gromacs.how to add water to a bilayer.i tried adding water to entire system and then removed water from sides using tcl script.But its not working. Is there anyway to build lipid layer by layer and add water or something can be done with genconf,genbox command so that wate