On 8/2/13 2:04 AM, Venkat Reddy wrote:
Thanks Justin for the quick reply. I am simulating a protein with bound
lipids. I am in a dilemma to choose the direction of the normal to
calculate order parameter. In your *Membrane-protein *simulation tutorial,
you have chosen normal to the bilayer alon
Thanks Justin for the quick reply. I am simulating a protein with bound
lipids. I am in a dilemma to choose the direction of the normal to
calculate order parameter. In your *Membrane-protein *simulation tutorial,
you have chosen normal to the bilayer along the z-axis. But in my case,
there is no b
On 8/1/13 12:07 PM, Venkat Reddy wrote:
Dear Gmx-users,
In the GROMACS site, it has been mentioned that there is a bug (Instead of
numbering carbons from 2-17, the numbering starts from 1-16) in g_order
program up to, and including, v4.5.4. But when I am using v4.5.5, I am
getting the same sort
Dear Gmx-users,
In the GROMACS site, it has been mentioned that there is a bug (Instead of
numbering carbons from 2-17, the numbering starts from 1-16) in g_order
program up to, and including, v4.5.4. But when I am using v4.5.5, I am
getting the same sort of numbering. Is it normal or I should renu
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