Re: [gmx-users] Re: stepsize too small ... but potential energ negative!

2010-05-25 Thread Justin A. Lemkul
Anna Marabotti wrote: Dear Justin, I would like to say that you were true, but it isn't! :-( I launched the minimization steps first changing in my em.mdp file the emstep from 0.1 to 0.01 as you suggested, then using directly your minim.mdp file from the lysozyme tutorial to create the .tpr: i

[gmx-users] Re: stepsize too small ... but potential energ negative!

2010-05-25 Thread Anna Marabotti
Dear Justin, I would like to say that you were true, but it isn't! :-( I launched the minimization steps first changing in my em.mdp file the emstep from 0.1 to 0.01 as you suggested, then using directly your minim.mdp file from the lysozyme tutorial to create the .tpr: integrator = stee