[gmx-users] Re: pdb2gmx problem

2010-10-04 Thread David van der Spoel
On 2010-10-03 23.16, ahmet yıldırım wrote: Dear Prof. Spoel, I am a Ph.D. student, Department of Physics, Harran University, Turkey. I've written the Gromacs Mail list before, but I did not get the answer that I wanted. I am new user Gromacs. I need your helps. *1. I installed fftw-3.2.2 as fol

[gmx-users] Re: pdb2gmx problem

2009-08-22 Thread Justin A. Lemkul
leila karami wrote: Hi I have PDB file of DNA (PDB ID: 1D49). I intend generate topology file by pdb2gmx. One error is created: (atom O5 in residue DCYT 1 not found in rtp entry with 21 atom while sorting atom). 2 notes: 1: I checked rtp file for used force field. In rtp file, there is [DC