Re: [gmx-users] Re: gmx-users Digest, Vol 94, Issue 185

2012-02-29 Thread Mark Abraham
On 29/02/2012 4:24 PM, bo.shuang wrote: When I use explicit solvent, and set tau_t=2, it looks OK. The ions move faster when I increase the temperature. But when I use implicit solvent, it seems not change at all. Also, I am using sd instead of bd. I forgot to change it back. And in my understa

[gmx-users] Re: gmx-users Digest, Vol 94, Issue 185

2012-02-28 Thread bo.shuang
When I use explicit solvent, and set tau_t=2, it looks OK. The ions move faster when I increase the temperature. But when I use implicit solvent, it seems not change at all. Also, I am using sd instead of bd. I forgot to change it back. And in my understanding, the diffusive constant of Brown motio