Hi Evelyne,
So I was reading carelessly... I didn't notice you used an index file with
trjcat. If you later try to use the same index file, that may indeed cause
a segfault. Good that it works now.
Cheers,
Tsjerk
On Fri, Sep 6, 2013 at 12:29 PM, deplazes wrote:
> You also need to make a new
You also need to make a new index file that corresponds to the new , reduced
.tpr file
Cheers
E
Enjoy Ausserberg
From: "Tsjerk Wassenaar [via GROMACS]"
mailto:ml-node+s5086n5011009...@n6.nabble.com>>
Date: Fri, 6 Sep 2013 02:12:25 -0700
To: Evelyne Deplazes mailto:e.depla...@uq.edu.au>>
Subject
You're a genious. It works!
Thanks a lot
From: "Tsjerk Wassenaar [via GROMACS]"
mailto:ml-node+s5086n5011009...@n6.nabble.com>>
Date: Fri, 6 Sep 2013 02:12:25 -0700
To: Evelyne Deplazes mailto:e.depla...@uq.edu.au>>
Subject: Re: Segmentation Fault using g_cluster
Hi Evelyne,
I haven't got a clu
Hi Evelyne,
I haven't got a clue... But does it work if you use -settime when
concatenating the trajectories, to avoid having frames with the same time
index? It shouldn't cause a segfault, but it might.
Cheers,
Tsjerk
On Fri, Sep 6, 2013 at 7:20 AM, deplazes wrote:
> Hi guys
>
> do you have
Hi guys
do you have an idea what is causing the segmentation fault with g_cluster?
I do the following
1 . I combine trr files from different simulations using trjcat and select
backbone atoms only
trjcat -f ../../*C/runs/*/*trr -cat -n index.ndx -o trajout_combined.xtc
2. I make a new .tp
Hi guys
do you have an idea what is causing the segmentation fault with g_cluster?
I do the following
1 . I combine trr files from different simulations using trjcat and select
backbone atoms only
trjcat -f ../../*C/runs/*/*trr -cat -n index.ndx -o trajout_combined.xtc
2. I make a new .tp
Hi guys
do you have an idea what is causing the segmentation fault with g_cluster?
I do the following
1 . I combine trr files from different simulations using trjcat and select
backbone atoms only
trjcat -f ../../*C/runs/*/*trr -cat -n index.ndx -o trajout_combined.xtc
2. I make a new .tp
Hi guys
do you have an idea what is causing the segmentation fault with g_cluster?
I do the following
1 . I combine trr files from different simulations using trjcat and select
backbone atoms only
trjcat -f ../../*C/runs/*/*trr -cat -n index.ndx -o trajout_combined.xtc
2. I make a new .tp
8 matches
Mail list logo
