Re: [gmx-users] Re: Implicit solvent problems

2011-10-13 Thread Mark Abraham
On 14/10/2011 12:38 AM, liaoxyi wrote: Dear all, Thank you for giving me some hints for my problems. The problems has been solved now, the key is to adjust the gb_dielectric_offset to a smaller value like 0.05, then the /minimization /gets going normally. You should use the value recommen

[gmx-users] Re: Implicit solvent problems

2011-10-13 Thread liaoxyi
Dear all, Thank you for giving me some hints for my problems. The problems has been solved now, the key is to adjust the gb_dielectric_offset to a smaller value like 0.05, then theminimizationgets going normally. Subsequently, the NVT goes well. Still, I don’t quite understand what role theg