bharat gupta wrote:
Since the paper that I am following says that for that protein (GFP) 1ns
simulation is enough as other people carried out 10ns for the same
protein and rmsd follows the same pattern which is being shown by that
1ns simulation ..
When were those studies published? With m
Since the paper that I am following says that for that protein (GFP) 1ns
simulation is enough as other people carried out 10ns for the same protein
and rmsd follows the same pattern which is being shown by that 1ns
simulation ..
So I decided to do a 3ns simulation the RMSD that I got was same
bharat gupta wrote:
Hi
I did a simulation of 3 ns with OPLS AA 2001 Force Field for a protein
of 230 aa and also I carried out a simulation of 10ns for the same
protein but with different force field (Amber 2006) . I obtained the
rmsd of the trajectories of both simulation , which I found t
Hi
I did a simulation of 3 ns with OPLS AA 2001 Force Field for a protein of
230 aa and also I carried out a simulation of 10ns for the same protein but
with different force field (Amber 2006) . I obtained the rmsd of the
trajectories of both simulation , which I found to be different ?? i.e. 3ns
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