Re: [gmx-users] RMSF error when fitting to average structure

On 8/16/12 10:13 AM, tdgrant1 wrote: Dear all, I have a 70 ns trajectory for which the last 60 ns appears to be equilibrated. I'm attempting to create a plot of RMSF but I want to align it to the equilibrated structure, not the starting structure. I first ran g_rmsf using the starting struct

[gmx-users] RMSF error when fitting to average structure

Dear all, I have a 70 ns trajectory for which the last 60 ns appears to be equilibrated. I'm attempting to create a plot of RMSF but I want to align it to the equilibrated structure, not the starting structure. I first ran g_rmsf using the starting structure as the reference structure over only