Re: [gmx-users] RMSD bonds and angles

2011-10-04 Thread Tsjerk Wassenaar
Hey :) If that is what you want, you'll have to turn to programming. But what do you think to gain from it? First get to the bottom of things you can do with gromacs already. Then, if the tools available don't help in answering your question, think of what you'd need to get it done. Cheers, Tsje

Re: [gmx-users] RMSD bonds and angles

2011-10-04 Thread ahmet yıldırım
No, it calculates with respect to the positions atom. but I want to calculate the RMSD bonds (A˚ ) and RMSD angles (o). 2011/10/4 Mark Abraham > On 4/10/2011 7:05 PM, ahmet yıldırım wrote: > > any hints? :( > > > You didn't find something useful in the section titled "Root mean square > deviati

Re: [gmx-users] RMSD bonds and angles

2011-10-04 Thread Mark Abraham
On 4/10/2011 7:05 PM, ahmet y?ld?r?m wrote: any hints? :( You didn't find something useful in the section titled "Root mean square deviations in structure"? Mark 03 Ekim 2011 22:32 tarihinde ahmet y?ld?r?m > yazd?: I look at chapter 8 but I didnt found tha

Re: [gmx-users] RMSD bonds and angles

2011-10-04 Thread ahmet yıldırım
any hints? :( 03 Ekim 2011 22:32 tarihinde ahmet yıldırım yazdı: > I look at chapter 8 but I didnt found that I want. can you give a hint? > Thanks > > > 2011/10/3 Mark Abraham > >> On 3/10/2011 10:29 PM, ahmet yıldırım wrote: >> >>> Dear users, >>> >>> How can I calculate the RMSD bonds (A˚ )

Re: [gmx-users] RMSD bonds and angles

2011-10-03 Thread ahmet yıldırım
I look at chapter 8 but I didnt found that I want. can you give a hint? Thanks 2011/10/3 Mark Abraham > On 3/10/2011 10:29 PM, ahmet yıldırım wrote: > >> Dear users, >> >> How can I calculate the RMSD bonds (A˚ ) and RMSD angles (o)? >> > > Please start your search in chapter 8 of the manual, an

Re: [gmx-users] RMSD bonds and angles

2011-10-03 Thread Mark Abraham
On 3/10/2011 10:29 PM, ahmet yıldırım wrote: Dear users, How can I calculate the RMSD bonds (A˚ ) and RMSD angles (o)? Please start your search in chapter 8 of the manual, and consider doing some tutorial material. Someone is likely to have covered some similar procedures. Mark -- gmx-user

[gmx-users] RMSD bonds and angles

2011-10-03 Thread ahmet yıldırım
Dear users, How can I calculate the RMSD bonds (A˚ ) and RMSD angles (o)? Thanks in advance -- Ahmet YILDIRIM -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search