[gmx-users] REMD with umbrella sampling in Gromacs 4.5.5

2012-11-21 Thread dejun_...@urmc.rochester.edu
Hi all, I've read some earlier posts in the forum about replica exchange combined with umbrella sampling but still not sure if the restrain potential defined in the pull code will be included in the exchange criterion: P(i<->j) = min (1, exp[ (beta_i-beta_j)*(U(Ri, Dj) + U(Rj,Di) - U(Ri,Di) - U(R

[gmx-users] REMD with umbrella sampling in Gromacs 4.5.5

2012-11-21 Thread Lin, Dejun
Hi all, I've read some earlier posts in the forum about replica exchange combined with umbrella sampling but still not sure if the restrain potential defined in the pull code will be included in the exchange criterion: P(i<->j) = min (1, exp[ (beta_i-beta_j)*(U(Ri, Dj) + U(Rj,Di) - U(Ri,Di) -