Re: [gmx-users] REMD:subsystems are not compatible.

2013-05-24 Thread Mark Abraham
Depends what's in the _prev files. The original problem might be http://redmine.gromacs.org/issues/801, in which case you should try 4.5.6 On Fri, May 24, 2013 at 1:01 PM, suhani nagpal wrote: > Hello Mark > > Thanks for the suggestions. > > I used gmxcheck on my _prev.cpt files, they all show

Re: [gmx-users] REMD:subsystems are not compatible.

2013-05-24 Thread suhani nagpal
Hello Mark Thanks for the suggestions. I used gmxcheck on my _prev.cpt files, they all show last time step - 7.3 ns but when I resume remd with _prev.cpt files , it's starting from 0 ps. Did i miss something ? On Fri, May 24, 2013 at 3:37 PM, Mark Abraham wrote: > Probably your set of state_

Re: [gmx-users] REMD:subsystems are not compatible.

2013-05-24 Thread Mark Abraham
Probably your set of state_.cpt files is mutually inconsistent after some crash, because some files were written and some were not. Use gmxcheck to find out the times. The good news is that the _prev.cpt files will allow you to construct a self-consistent set. Mark On Fri, May 24, 2013 at 11:36

[gmx-users] REMD:subsystems are not compatible.

2013-05-24 Thread suhani nagpal
Greetings I'm running REMD with 96 replicas. It has run till 7.3 ns after extending it once using mdrun_mpi -s md_.tpr -multi 96 -replex 2000 -cpi state_.cpt -noappend And if i put to restart this again it shows the error: --- Program mdrun_m