minnu vijayan wrote:
hi all
i am a new user of gromacs. tried to run normal mode analysis. but
failed. i did up to mdrun.but in output i am not getting .mtx
file.(hesian matrix)
what may be the problem..can anybody help regarding this?
In order to attract the best possible response from the
hi all
i am a new user of gromacs. tried to run normal mode analysis. but failed. i
did up to mdrun.but in output i am not getting .mtx file.(hesian matrix)
what may be the problem..can anybody help regarding this?
On Fri, Nov 21, 2008 at 8:01 PM, Maria Musgaard <[EMAIL PROTECTED]> wrote:
> If yo
If you want to generate a kind of trajectory from the eigenvectors, I
think you can use g_nmtraj and then visualise the vibration with e.g.
VMD.
/Maria
Quoting Marudachalam S <[EMAIL PROTECTED]>:
I don't know what exactly you are looking for, but normal modes can be
visualized by freeware
I don't know what exactly you are looking for, but normal modes can be
visualized by freewares like Chemcraft, Molekel, etc. Hope it helps.
Marudachalam.
>
>
>
> Hi All,
> I am doing normal mode analysis. After getting the eigen
> frequencies, is
Hi All,
I am doing normal mode analysis. After getting the eigen frequencies,
is there a way we can visualize the vibrational modes in gromacs. And even how
to know which frequency corresponds to which mode of vibration. I saw that IED
is used
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