On 2/7/13 12:40 PM, Yun Shi wrote:
A general question:
In COM pulling (pull two molecules away), does the weakest
inter-molecular interaction always break first? Or is it the
interaction aligned on the pulling direction break first?
Probably both. Whatever you do with SMD is path-dependent
A general question:
In COM pulling (pull two molecules away), does the weakest
inter-molecular interaction always break first? Or is it the
interaction aligned on the pulling direction break first?
In other words, does every part of the molecule "feel" the pulling
force? Or the part close to the
On 2/4/13 9:32 PM, Yun Shi wrote:
Hi all,
I am pulling one monomer of a tetrameric protein away from the other
three monomers with pull_k1 = 1 and pull_rate1 = 0.0005.
As shown in the attached picture, the green monomer (being pulled) has
unfolded while two regions on it are still interac
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