RE: [gmx-users] Protein jumping out of water box

2010-12-03 Thread Kukol, Andreas
-users-boun...@gromacs.org] On Behalf Of ? ?? Sent: 03 December 2010 09:57 To: gmx-users@gromacs.org Subject: [gmx-users] Protein jumping out of water box Hi all, I have been running nano second long simulations using Gromacs 4.0.7 and connecting them to create a long time period. on the

Re: [gmx-users] Protein jumping out of water box

2010-12-03 Thread Justin A. Lemkul
גדעון לפידות wrote: Hi all, I have been running nano second long simulations using Gromacs 4.0.7 and connecting them to create a long time period. on the last run the protein "jumped" out of the water box (the output files were viewed using VMD) does anyone know why this could have happened?

[gmx-users] Protein jumping out of water box

2010-12-03 Thread גדעון לפידות
Hi all, I have been running nano second long simulations using Gromacs 4.0.7 and connecting them to create a long time period. on the last run the protein "jumped" out of the water box (the output files were viewed using VMD) does anyone know why this could have happened? Thanks, Gideon -- gmx-use