Re: [gmx-users] Protein Orientation

sure. thanks On Sun, Oct 18, 2009 at 10:45 PM, Justin A. Lemkul wrote: > > > sunny mishra wrote: >> >> oh cool. I have gromacs version 4.4 so my protein will be on the x >> axis by default and to orient the long axis of protein along z axis >> then I have to editconf it and then rotate the final

Re: [gmx-users] Protein Orientation

sunny mishra wrote: oh cool. I have gromacs version 4.4 so my protein will be on the x axis by default and to orient the long axis of protein along z axis then I have to editconf it and then rotate the final structure to 90 degrees along y axis, right? reply will be highly appreciated Try it

Re: [gmx-users] Protein Orientation

oh cool. I have gromacs version 4.4 so my protein will be on the x axis by default and to orient the long axis of protein along z axis then I have to editconf it and then rotate the final structure to 90 degrees along y axis, right? reply will be highly appreciated Thanks, Sunny On Sun, Oct 18,

Re: [gmx-users] Protein Orientation

sunny mishra wrote: Dear All, I am following the tutorial given by justin and have question regarding the orientation of protein. Tutorial says that orient the protein along z axis using editconf -princ command followed by the rotation along y axis. My question is that when I use the editconf

[gmx-users] Protein Orientation

Dear All, I am following the tutorial given by justin and have question regarding the orientation of protein. Tutorial says that orient the protein along z axis using editconf -princ command followed by the rotation along y axis. My question is that when I use the editconf -princ command, does it