Re: [gmx-users] Problem with domain decomposition

2009-09-26 Thread Mark Abraham
Stephane Abel wrote: Hi gromacs users and experts I am doing some simulations using 8 CPU of solvate peptide (8 AA) in octahedron truncated box (5150) with SPC water with GMX 4.05. To simulate during a long time i am cutting my simulation in 24 h time period (25 ns/day) using checkpoints

[gmx-users] Problem with domain decomposition

2009-09-25 Thread Stephane Abel
Hi gromacs users and experts I am doing some simulations using 8 CPU of solvate peptide (8 AA) in octahedron truncated box (5150) with SPC water with GMX 4.05. To simulate during a long time i am cutting my simulation in 24 h time period (25 ns/day) using checkpoints. During my last simu