Re: [gmx-users] Problem with adding H using amber03

Peggy Yao wrote: Dear all, I am trying to use amber03 force field. I corrected the amino acid names as described on http://chemistry.csulb.edu/ffamber/. However, when I ran pdb2gmx on a PDB file without H-atoms, I got the following error: pdb2gmx -ff amber03 -f protein_without_H.pdb -o p

[gmx-users] Problem with adding H using amber03

Dear all, I am trying to use amber03 force field. I corrected the amino acid names as described on http://chemistry.csulb.edu/ffamber/. However, when I ran pdb2gmx on a PDB file without H-atoms, I got the following error: pdb2gmx -ff amber03 -f protein_without_H.pdb -o protein_amber03.pdb ... W