Re: [gmx-users] Problem with Amber99SB-ILDN ff

2013-07-08 Thread Justin Lemkul
On 7/8/13 6:36 AM, Melchor S. wrote: I am trying to create the gromacs topology and gro file, using pdb2gmx, with the Amber99SB-ILDN ff. The problem is that my protein has two chains, but the second one, is a one residue chain, that contains a GLU. When I try it I obtain: Fatal error: In the

[gmx-users] Problem with Amber99SB-ILDN ff

2013-07-08 Thread Melchor S.
I am trying to create the gromacs topology and gro file, using pdb2gmx, with the Amber99SB-ILDN ff. The problem is that my protein has two chains, but the second one, is a one residue chain, that contains a GLU. When I try it I obtain: Fatal error: In the chosen force field there is no residue