Re: [gmx-users] Problem with 512 membrane

2011-06-14 Thread Justin A. Lemkul
Du Jiangfeng (BIOCH) wrote: Dear Gro users, We created an all-atom system with 512 DPPCs by the method which was suggested by Justin (genconf -f 128.gro -o 512.gro -nbox 2 2 1) and a CG system with 512 DSPCs by using Martini self assembly tutorial. We do get nice bilayers, however after minimiz

[gmx-users] Problem with 512 membrane

2011-06-14 Thread Du Jiangfeng (BIOCH)
Dear Gro users, We created an all-atom system with 512 DPPCs by the method which was suggested by Justin (genconf -f 128.gro -o 512.gro -nbox 2 2 1) and a CG system with 512 DSPCs by using Martini self assembly tutorial. We do get nice bilayers, however after minimization, the systems break apar