Re: [gmx-users] Problem in RMSD plot

On 6/13/13 10:47 AM, Sainitin Donakonda wrote: Hi, Recently i ran 20ns protein ligand simulation ..in cluster ..I ran it in 2 parts first i ran 10ns and extended to another 10ns.. Then I got 2 .xtc files...i combined both these trajectories using following command trjcat -f 1.xtc 2.xtc -o co

[gmx-users] Problem in RMSD plot

Hi, Recently i ran 20ns protein ligand simulation ..in cluster ..I ran it in 2 parts first i ran 10ns and extended to another 10ns.. Then I got 2 .xtc files...i combined both these trajectories using following command trjcat -f 1.xtc 2.xtc -o combine.xtc -cat Then using combine.xtc i plotted RM