Re: [gmx-users] Placing the molecule in the centre of the box

2007-01-08 Thread Mark Abraham
> Dear All > > I set up my molecule in the centre of the box using editconf command and > -c option. Then i solvate the box and run the md step. But after the > Simulation the molecule doesnot remain anywhere near the centre. Why should it? You can use options to trjconv to re-center the solute i

[gmx-users] Placing the molecule in the centre of the box

2007-01-08 Thread nur avneet
Dear All I set up my molecule in the centre of the box using editconf command and -c option. Then i solvate the box and run the md step. But after the Simulation the molecule doesnot remain anywhere near the centre. Please suggest Regrads nur Send free SMS to your Friends on Mobile f