Try combining indices with that, use "make_ndx -h". --Omer.
Koby Levy research group,
Weizmann Institute of Science.
FAX: 972-77-444-7905
http://www.weizmann.ac.il/sb/faculty_pages/Levy/
On Wed, Jul 22, 2009 at 18:27, Justin A. Lemkul wrote:
> The trjconv -pbc options were designed to fix this
Cooper, David R wrote:
Hello,
I am trying to analyze the trajectory of the estrogen receptor alpha in
water. As you know, the ER is a dimer and as such when it approaches
the boundary for the simulation one of the monomers jumps to the other
side of my box and thus screws up any post simul
Hello,
I am trying to analyze the trajectory of the estrogen receptor alpha in water.
As you know, the ER is a dimer and as such when it approaches the boundary for
the simulation one of the monomers jumps to the other side of my box and thus
screws up any post simulation calculations that we a
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