Re: [gmx-users] Output pinning for mdrun

2013-10-24 Thread Mark Abraham
On Thu, Oct 24, 2013 at 4:52 PM, Carsten Kutzner wrote: > On Oct 24, 2013, at 4:25 PM, Mark Abraham > wrote: > > > Hi, > > > > No. mdrun reports the stride with which it moves over the logical cores > > reported by the OS, setting the affinity of GROMACS threads to logical > > cores, and warning

Re: [gmx-users] Output pinning for mdrun

2013-10-24 Thread Szilárd Páll
Hi Carsten, On Thu, Oct 24, 2013 at 4:52 PM, Carsten Kutzner wrote: > On Oct 24, 2013, at 4:25 PM, Mark Abraham wrote: > >> Hi, >> >> No. mdrun reports the stride with which it moves over the logical cores >> reported by the OS, setting the affinity of GROMACS threads to logical >> cores, and wa

Re: [gmx-users] Output pinning for mdrun

2013-10-24 Thread Carsten Kutzner
On Oct 24, 2013, at 4:25 PM, Mark Abraham wrote: > Hi, > > No. mdrun reports the stride with which it moves over the logical cores > reported by the OS, setting the affinity of GROMACS threads to logical > cores, and warnings are written for various wrong-looking cases, but we > haven't taken th

Re: [gmx-users] Output pinning for mdrun

2013-10-24 Thread Mark Abraham
Hi, No. mdrun reports the stride with which it moves over the logical cores reported by the OS, setting the affinity of GROMACS threads to logical cores, and warnings are written for various wrong-looking cases, but we haven't taken the time to write a sane report of how GROMACS logical threads an

[gmx-users] Output pinning for mdrun

2013-10-24 Thread Carsten Kutzner
Hi, can one output how mdrun threads are pinned to CPU cores? Thanks, Carsten -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don'