Re: [gmx-users] Number of nodes

2011-10-31 Thread Mark Abraham
On 31/10/2011 11:29 PM, Kavyashree M wrote: Hello, System Admin said that the Job fails on 32 and 128 because memory is insufficient for each task, so upon increasing the nodes, data gets distributed across more number of nodes and each node gets less memory occupancy and he also mentioned that

Re: [gmx-users] Number of nodes

2011-10-31 Thread Kavyashree M
Hello, System Admin said that the Job fails on 32 and 128 because memory is insufficient for each task, so upon increasing the nodes, data gets distributed across more number of nodes and each node gets less memory occupancy and he also mentioned that he was able to run on 512 nodes but it was giv

Re: [gmx-users] Number of nodes

2011-10-31 Thread Justin A. Lemkul
Kavyashree M wrote: Dear Users, I was trying to run a simulation (gromacs4.5.3) on a Bluegene/L machine. But I was unable to run. System admin say that I need to change the input file. I am not sure what needs to be changed in the input file which specifies no. of nodes usage. Sounds like y

[gmx-users] Number of nodes

2011-10-31 Thread Kavyashree M
Dear Users, I was trying to run a simulation (gromacs4.5.3) on a Bluegene/L machine. But I was unable to run. System admin say that I need to change the input file. I am not sure what needs to be changed in the input file which specifies no. of nodes usage. I am not familiar with the bluegene mac