Re: [gmx-users] Missing Amino Acids

2011-01-29 Thread Justin A. Lemkul
simon sham wrote: Hi, 1. I have a protein which is missing both the first and last amino acids in the sequence. Do you know any free linux softwares that can insert these missing amino acids? A number of possibilities are listed here: http://www.gromacs.org/Documentation/File_Formats/Coord

[gmx-users] Missing Amino Acids

2011-01-29 Thread simon sham
Hi, 1. I have a protein which is missing both the first and last amino acids in the sequence. Do you know any free linux softwares that can insert these missing amino acids? 2. Since only two amino acids are missing, one in both end, can I simply ignore them in simulations? Thanks for your insi