On 10/12/12 10:42 AM, rama david wrote:
Hi Gromacs friends,
I planed to use martini coarse grained ff to my simulation protocol.
My simulation protocol is:
I am placing two peptide at far distance.IAt these point i am using Gromos
FF they are initially in random coil structure.
Now when I r
No, it does NOT!
HAve you red the paper?!
This implementation is an adoc representation to mimic specific
sequences of short peptides! They do never for any secondary structure!
On Oct 10, 2012, at 3:05 PM, francesco oteri wrote:
Hi rama,
actually MARTINI has been further improved to allo
Hi rama,
actually MARTINI has been further improved to allow secondary structure
change.
The title is:
*"Improving Internal Peptide Dynamics in the Coarse-Grained MARTINI Model:
Toward Large-Scale Simulations of Amyloid- and Elastin-like Peptides"*
and here there is a link to the paper:
http://dx.
Hi thank you
Please told me the name of Freely available software on which these FF can
be used ..
Thank you in advance
With best wishes and regards,
Rama david
On Wed, Oct 10, 2012 at 6:26 PM, XAvier Periole wrote:
>
> Nope, but on other softwares.
>
>
> On Oct 10, 2012, at 2:50 PM, rama d
Nope, but on other softwares.
On Oct 10, 2012, at 2:50 PM, rama david wrote:
Thank you for your reply,
Are these Cg can be used in Gromacs.
Thank you in advance.
With best wishes and regards,
Rama david
On Wed, Oct 10, 2012 at 6:13 PM, XAvier Periole
wrote:
Martini FF cannot model
Thank you for your reply,
Are these Cg can be used in Gromacs.
Thank you in advance.
With best wishes and regards,
Rama david
On Wed, Oct 10, 2012 at 6:13 PM, XAvier Periole wrote:
>
> Martini FF cannot model changes in secondary structure ... other CG FF
> can. You'll find them easily in th
Martini FF cannot model changes in secondary structure ... other CG FF
can. You'll find them easily in the literature. Notably the ones from
Deserno or Derreumaux.
On Oct 10, 2012, at 2:03 PM, rama david wrote:
Hi friends,
I planed to use the martini force-field for my simulation study o
DAVID RINCON wrote:
Good afternoon,
I would like to know how I can donwload the Martini force field. I have
already tried on its webpage:
http://md.chem.rug.nl/~marrink/MARTINI/Parameters.html
But, it seems it is not working.
The link you've posted is working just fine at the moment.
-Just
Good afternoon,
I would like to know how I can donwload the Martini force field. I have already
tried on its webpage:
http://md.chem.rug.nl/~marrink/MARTINI/Parameters.html
But, it seems it is not working.
Thanks a lot for your kindly help.
David Rincon.
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