Re: [gmx-users] Martini + other " force field "

2009-02-03 Thread Jones de Andrade
Am I wrong, or are you considering some kind of MSCG (which is not into gromacs at least in a standard, straight forward out of the box way)? That's nice, would be really interesting to implement, would take long time and is still a relativelly open-field with lot to be still explored. I think we

Re: [gmx-users] Martini + other " force field "

2009-02-03 Thread XAvier Periole
On Feb 3, 2009, at 4:03 PM, Elton Carvalho wrote: On Mon, Feb 2, 2009 at 7:50 PM, XAvier Periole wrote: -No: is where you can find much more arguments. First of all the two force fields have not been parametrized consistently. Second you'll probalby have problems in defining the interac

Re: [gmx-users] Martini + other " force field "

2009-02-03 Thread Elton Carvalho
On Mon, Feb 2, 2009 at 7:50 PM, XAvier Periole wrote: > -No: is where you can find much more arguments. First of all the two force > fields have not > been parametrized consistently. Second you'll probalby have problems in > defining the > interactions between the two approches. How the protein wi

Re: [gmx-users] Martini + other " force field "

2009-02-02 Thread XAvier Periole
On Feb 2, 2009, at 10:19 PM, DAVID RINCON wrote: Good afternoon, The reason of this email is to ask: is it possible to combine Martini's force field with the opls force field? The system is conformed by dopc membrane [Modeled by Martini's force field] with a small molecule of about 50 a

[gmx-users] Martini + other " force field "

2009-02-02 Thread DAVID RINCON
Good afternoon, The reason of this email is to ask: is it possible to combine Martini's force field with the opls force field? The system is conformed by dopc membrane [Modeled by Martini's force field] with a small molecule of about 50 atoms [Modeled with opls. With all its hydrogens]. if th