Re: [gmx-users] MD => system exploding

2008-10-05 Thread Justin A. Lemkul
Chih-Ying Lin wrote: HI When I run MD, my system is exploding. And, I found after minimisation, the atoms of my molecule are seperated apart. That probably suggests that whatever parameters you've applied are not correct. The overall charge of my system is +1, and I put one molecule in th

[gmx-users] MD => system exploding

2008-10-05 Thread Chih-Ying Lin
HI When I run MD, my system is exploding. And, I found after minimisation, the atoms of my molecule are seperated apart. The overall charge of my system is +1, and I put one molecule in the gas phase to do the structure test. But, it was already exploding. Is it hard for a +1 charge molecule to