Re: [gmx-users] Lateral Diffusion of Lipids

2013-08-14 Thread Jochen Hub
Am 8/12/13 5:26 AM, schrieb Kieu Thu Nguyen: > Dear users, > > I want to use g_msd to measure diffusion coefficients of lipid bilayer. But > i do not know how to choose the reference atom per lipid for an any type of > lipid, such as POPC, DOPC,... > Where i can get these references ? One sugge

Re: [gmx-users] Lateral Diffusion of Lipids

2013-08-12 Thread Kieu Thu Nguyen
Thanks so much ! I guessed should i choose it but i am not sure :-) So, if most people choose it, i think it is ok. On Mon, Aug 12, 2013 at 4:25 PM, Justin Lemkul wrote: > > > On 8/11/13 11:26 PM, Kieu Thu Nguyen wrote: > >> Dear users, >> >> I want to use g_msd to measure diffusion coefficient

Re: [gmx-users] Lateral Diffusion of Lipids

2013-08-12 Thread Justin Lemkul
On 8/11/13 11:26 PM, Kieu Thu Nguyen wrote: Dear users, I want to use g_msd to measure diffusion coefficients of lipid bilayer. But i do not know how to choose the reference atom per lipid for an any type of lipid, such as POPC, DOPC,... Where i can get these references ? Most people choose

Re: [gmx-users] Lateral Diffusion of Lipids

2013-08-12 Thread Dr. Vitaly Chaban
Via an index file, I would guess... Or what do you mean exactly? Dr. Vitaly V. Chaban On Mon, Aug 12, 2013 at 5:26 AM, Kieu Thu Nguyen wrote: > Dear users, > > I want to use g_msd to measure diffusion coefficients of lipid bilayer. But > i do not know how to choose the reference atom per lipid

[gmx-users] Lateral Diffusion of Lipids

2013-08-11 Thread Kieu Thu Nguyen
Dear users, I want to use g_msd to measure diffusion coefficients of lipid bilayer. But i do not know how to choose the reference atom per lipid for an any type of lipid, such as POPC, DOPC,... Where i can get these references ? Thanks so much for any help ! ~Thu -- gmx-users mailing listgm