Re: [gmx-users] Jumping protein

2011-08-30 Thread Justin A. Lemkul
Steven Neumann wrote: Dear Gromacs Users, I run md simulation of protein in water obtaining trajectory. Because in VMD my protein was jumping plus I had some part of my protein shaded in some frames I could not catch one place to create a movie I used: trjconv -f md.trr -s md.tpr -pbc n

[gmx-users] Jumping protein

2011-08-30 Thread Steven Neumann
Dear Gromacs Users, I run md simulation of protein in water obtaining trajectory. Because in VMD my protein was jumping plus I had some part of my protein shaded in some frames I could not catch one place to create a movie I used: trjconv -f md.trr -s md.tpr -pbc nojump -o mdnojump.xtc trjcon