Hi Justin,
Thank your very much for reply i have done both ways i also have backbone
RMSD data so i will consider only this in my analysis.
Cheers,
Sainitin
On Thu, Jul 4, 2013 at 3:50 PM, Justin Lemkul wrote:
>
>
> On 7/4/13 5:17 AM, Sainitin Donakonda wrote:
>
>> Hi all,
>>
>> I ran 20ns si
On 7/4/13 5:17 AM, Sainitin Donakonda wrote:
Hi all,
I ran 20ns simulation on protein drug complex..now i want to check overall
stability of this complex
to acheive this i did following i supplied index file and choose
Protein_Lig option for both least square fit and RMSD calculation..i used
f
Hi all,
I ran 20ns simulation on protein drug complex..now i want to check overall
stability of this complex
to acheive this i did following i supplied index file and choose
Protein_Lig option for both least square fit and RMSD calculation..i used
following command
g_rms -f em.tpr (intital struct
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